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Domain-Domain-Interaction of RNA_pol_L and RNA_pol_Rpb1_2

Topologies observed in interactions between these two domains (hide)

# Cases Topology HMM profile interface residues in RNA_pol_L HMM profile interface residues in RNA_pol_Rpb1_2
68 2 : 0
residues 42-45 of RNA_pol_L are in the interface residues 47-51 of RNA_pol_L are in the interface
residues 15-15 of RNA_pol_Rpb1_2 are in the interface residues 17-19 of RNA_pol_Rpb1_2 are in the interface residues 27-27 of RNA_pol_Rpb1_2 are in the interface residues 80-83 of RNA_pol_Rpb1_2 are in the interface residues 86-86 of RNA_pol_Rpb1_2 are in the interface residues 90-90 of RNA_pol_Rpb1_2 are in the interface residues 93-93 of RNA_pol_Rpb1_2 are in the interface residues 96-97 of RNA_pol_Rpb1_2 are in the interface residues 119-124 of RNA_pol_Rpb1_2 are in the interface residues 128-128 of RNA_pol_Rpb1_2 are in the interface
17 0 : 1
residues 39-42 of RNA_pol_L are in the interface residues 44-44 of RNA_pol_L are in the interface residues 46-47 of RNA_pol_L are in the interface residues 49-50 of RNA_pol_L are in the interface
residues 17-17 of RNA_pol_Rpb1_2 are in the interface residues 27-27 of RNA_pol_Rpb1_2 are in the interface residues 83-83 of RNA_pol_Rpb1_2 are in the interface residues 86-86 of RNA_pol_Rpb1_2 are in the interface residues 90-90 of RNA_pol_Rpb1_2 are in the interface residues 93-93 of RNA_pol_Rpb1_2 are in the interface residues 120-121 of RNA_pol_Rpb1_2 are in the interface residues 123-123 of RNA_pol_Rpb1_2 are in the interface
10 (not clustered)
9 1 : 0
residues 10-10 of RNA_pol_L are in the interface residues 39-42 of RNA_pol_L are in the interface residues 44-50 of RNA_pol_L are in the interface
residues 15-15 of RNA_pol_Rpb1_2 are in the interface residues 17-19 of RNA_pol_Rpb1_2 are in the interface residues 27-27 of RNA_pol_Rpb1_2 are in the interface residues 80-83 of RNA_pol_Rpb1_2 are in the interface residues 86-86 of RNA_pol_Rpb1_2 are in the interface residues 90-90 of RNA_pol_Rpb1_2 are in the interface residues 93-93 of RNA_pol_Rpb1_2 are in the interface residues 96-97 of RNA_pol_Rpb1_2 are in the interface residues 119-124 of RNA_pol_Rpb1_2 are in the interface residues 128-128 of RNA_pol_Rpb1_2 are in the interface

GO terms associated with both domains participating in this interaction
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This interaction has been found in the following PDB entries:

Sorting Order: by Z-score by topology lexicographically (by PDB)
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PDB ID chain 1 residues chain 2 residues score Z-score Topology more
information		 Visualization
2ppb L25-227 N620-765 4.8 3.45696 0 : 1 2ppb
1ynn B25-227 D620-765 6.39 3.43685 1 : 0 1ynn
2a6h L25-227 N620-765 3.58 3.10125 0 : 1 2a6h
2o5j B25-227 D620-765 3.77 3.01463 0 : 1 2o5j
3aoi G25-227 I620-765 3.85 2.96834 1 : 0 3aoi
3aoh L25-227 N620-765 4.52 2.92299 1 : 0 3aoh
2a6e B25-227 D620-765 3.66 2.88866 0 : 1 2a6e
3aoi B25-227 D620-765 3.78 2.83895 1 : 0 3aoi
3gto K31-103 A342-507 4.98 2.81698 2 : 0 3gto
1smy L25-227 N620-765 3.28 2.80364 0 : 1 1smy