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Domain-Domain-Interaction of RNA_pol_L and RNA_pol_Rpb2_6

Topologies observed in interactions between these two domains (hide)

# Cases Topology HMM profile interface residues in RNA_pol_L HMM profile interface residues in RNA_pol_Rpb2_6
111 4 : 2
residues 5-7 of RNA_pol_L are in the interface residues 9-11 of RNA_pol_L are in the interface residues 14-15 of RNA_pol_L are in the interface residues 17-23 of RNA_pol_L are in the interface residues 32-46 of RNA_pol_L are in the interface residues 49-53 of RNA_pol_L are in the interface residues 55-55 of RNA_pol_L are in the interface residues 57-57 of RNA_pol_L are in the interface residues 59-59 of RNA_pol_L are in the interface
residues 11-16 of RNA_pol_Rpb2_6 are in the interface residues 35-36 of RNA_pol_Rpb2_6 are in the interface residues 44-46 of RNA_pol_Rpb2_6 are in the interface residues 48-53 of RNA_pol_Rpb2_6 are in the interface residues 100-101 of RNA_pol_Rpb2_6 are in the interface residues 103-106 of RNA_pol_Rpb2_6 are in the interface residues 109-109 of RNA_pol_Rpb2_6 are in the interface residues 111-113 of RNA_pol_Rpb2_6 are in the interface residues 143-144 of RNA_pol_Rpb2_6 are in the interface residues 152-156 of RNA_pol_Rpb2_6 are in the interface residues 158-158 of RNA_pol_Rpb2_6 are in the interface residues 202-205 of RNA_pol_Rpb2_6 are in the interface residues 228-228 of RNA_pol_Rpb2_6 are in the interface residues 230-232 of RNA_pol_Rpb2_6 are in the interface residues 234-234 of RNA_pol_Rpb2_6 are in the interface residues 256-268 of RNA_pol_Rpb2_6 are in the interface residues 297-297 of RNA_pol_Rpb2_6 are in the interface residues 321-321 of RNA_pol_Rpb2_6 are in the interface residues 324-328 of RNA_pol_Rpb2_6 are in the interface residues 330-332 of RNA_pol_Rpb2_6 are in the interface residues 334-345 of RNA_pol_Rpb2_6 are in the interface
85 0 : 4
residues 6-7 of RNA_pol_L are in the interface residues 9-11 of RNA_pol_L are in the interface residues 14-14 of RNA_pol_L are in the interface residues 17-18 of RNA_pol_L are in the interface residues 32-32 of RNA_pol_L are in the interface residues 41-42 of RNA_pol_L are in the interface residues 44-44 of RNA_pol_L are in the interface residues 48-50 of RNA_pol_L are in the interface residues 52-52 of RNA_pol_L are in the interface
residues 90-90 of RNA_pol_Rpb2_6 are in the interface residues 100-100 of RNA_pol_Rpb2_6 are in the interface residues 237-237 of RNA_pol_Rpb2_6 are in the interface residues 253-256 of RNA_pol_Rpb2_6 are in the interface residues 258-259 of RNA_pol_Rpb2_6 are in the interface residues 336-340 of RNA_pol_Rpb2_6 are in the interface
23 3 : 4
residues 6-8 of RNA_pol_L are in the interface residues 10-11 of RNA_pol_L are in the interface residues 14-14 of RNA_pol_L are in the interface residues 17-18 of RNA_pol_L are in the interface residues 42-42 of RNA_pol_L are in the interface residues 50-50 of RNA_pol_L are in the interface
residues 90-90 of RNA_pol_Rpb2_6 are in the interface residues 100-100 of RNA_pol_Rpb2_6 are in the interface residues 237-237 of RNA_pol_Rpb2_6 are in the interface residues 253-256 of RNA_pol_Rpb2_6 are in the interface residues 258-259 of RNA_pol_Rpb2_6 are in the interface residues 336-340 of RNA_pol_Rpb2_6 are in the interface
20 (not clustered)
3 1 : 1
residues 10-10 of RNA_pol_L are in the interface residues 18-18 of RNA_pol_L are in the interface residues 35-38 of RNA_pol_L are in the interface residues 40-41 of RNA_pol_L are in the interface
residues 49-49 of RNA_pol_Rpb2_6 are in the interface residues 154-154 of RNA_pol_Rpb2_6 are in the interface residues 258-258 of RNA_pol_Rpb2_6 are in the interface residues 264-267 of RNA_pol_Rpb2_6 are in the interface residues 339-339 of RNA_pol_Rpb2_6 are in the interface
1 2 : 3
residues 78-79 of RNA_pol_L are in the interface residues 82-82 of RNA_pol_L are in the interface
residues 132-132 of RNA_pol_Rpb2_6 are in the interface residues 135-136 of RNA_pol_Rpb2_6 are in the interface residues 138-138 of RNA_pol_Rpb2_6 are in the interface residues 147-147 of RNA_pol_Rpb2_6 are in the interface residues 181-182 of RNA_pol_Rpb2_6 are in the interface
1 5 : 0
residues 35-37 of RNA_pol_L are in the interface
residues 266-266 of RNA_pol_Rpb2_6 are in the interface

GO terms associated with both domains participating in this interaction
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This interaction has been found in the following PDB entries:

Sorting Order: by Z-score by topology lexicographically (by PDB)
Display top 10 top 100 all
PDB ID chain 1 residues chain 2 residues score Z-score Topology more
information		 Visualization
2cw0 A25-227 C541-1026 35.03 8.44197 4 : 2 2cw0
2a6e K25-227 M541-1026 33.28 8.15426 4 : 2 2a6e
2o5j K25-227 M541-1026 34.41 8.15064 4 : 2 2o5j
1ynn A25-227 C541-1026 38.8 8.08683 4 : 2 1ynn
2a69 A25-227 C541-1026 35.66 8.0197 4 : 2 2a69
1ynj A25-227 C541-1026 41.19 7.88955 4 : 2 1ynj
1smy K25-227 M541-1026 32.54 7.86856 4 : 2 1smy
1i6v A25-227 C541-1026 37.99 7.72203 4 : 2 1i6v
1zyr A25-227 C541-1026 33.14 7.71423 4 : 2 1zyr
1smy A25-227 C541-1026 32.13 7.57715 4 : 2 1smy

Experimental Information on this interaction

Method or comment Protein 1 domain Protein 2 domain
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
YIL021w 16-260 (RNA_pol_L) YOR151c 750-1124 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YNL113w 57-133 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)
two hybrid YPR110c 48-330 (RNA_pol_L) YPR010c 698-1065 (RNA_pol_Rpb2_6)