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Domain-Domain-Interaction of RNA_pol_Rpb1_2 and RNA_pol_Rpb1_5

Topologies observed in interactions between these two domains (hide)

# Cases Topology HMM profile interface residues in RNA_pol_Rpb1_2 HMM profile interface residues in RNA_pol_Rpb1_5
56 1 : 0
residues 3-4 of RNA_pol_Rpb1_2 are in the interface residues 108-112 of RNA_pol_Rpb1_2 are in the interface residues 135-135 of RNA_pol_Rpb1_2 are in the interface residues 138-138 of RNA_pol_Rpb1_2 are in the interface
residues 28-29 of RNA_pol_Rpb1_5 are in the interface residues 32-32 of RNA_pol_Rpb1_5 are in the interface residues 72-73 of RNA_pol_Rpb1_5 are in the interface residues 77-77 of RNA_pol_Rpb1_5 are in the interface residues 80-81 of RNA_pol_Rpb1_5 are in the interface residues 83-84 of RNA_pol_Rpb1_5 are in the interface residues 87-88 of RNA_pol_Rpb1_5 are in the interface residues 91-91 of RNA_pol_Rpb1_5 are in the interface residues 264-265 of RNA_pol_Rpb1_5 are in the interface
50 0 : 0
residues 107-112 of RNA_pol_Rpb1_2 are in the interface residues 138-138 of RNA_pol_Rpb1_2 are in the interface
residues 28-29 of RNA_pol_Rpb1_5 are in the interface residues 32-32 of RNA_pol_Rpb1_5 are in the interface residues 72-73 of RNA_pol_Rpb1_5 are in the interface residues 77-77 of RNA_pol_Rpb1_5 are in the interface residues 80-81 of RNA_pol_Rpb1_5 are in the interface residues 83-84 of RNA_pol_Rpb1_5 are in the interface residues 87-88 of RNA_pol_Rpb1_5 are in the interface residues 91-91 of RNA_pol_Rpb1_5 are in the interface residues 264-265 of RNA_pol_Rpb1_5 are in the interface
10 (not clustered)
5 0 : 1
residues 107-112 of RNA_pol_Rpb1_2 are in the interface residues 138-138 of RNA_pol_Rpb1_2 are in the interface
residues 32-32 of RNA_pol_Rpb1_5 are in the interface residues 72-72 of RNA_pol_Rpb1_5 are in the interface residues 80-80 of RNA_pol_Rpb1_5 are in the interface residues 84-84 of RNA_pol_Rpb1_5 are in the interface residues 87-87 of RNA_pol_Rpb1_5 are in the interface

GO terms associated with both domains participating in this interaction
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This interaction has been found in the following PDB entries:

Sorting Order: by Z-score by topology lexicographically (by PDB)
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PDB ID chain 1 residues chain 2 residues score Z-score Topology more
information		 Visualization
2ppb D620-765 D1064-1437 5.07 3.24221 0 : 0 2ppb
3dxj N620-765 N1064-1437 4.59 3.12415 0 : 1 3dxj
3k7a A342-507 A807-1398 4.52 3.11877 1 : 0 3k7a
2a68 N620-765 N1064-1437 3.91 3.10199 0 : 0 2a68
2be5 N620-765 N1064-1437 4.4 3.05694 0 : 0 2be5
1iw7 D620-765 D1064-1437 3.84 3.05152 0 : 0 1iw7
2a6h D620-765 D1064-1437 3.91 3.03984 0 : 0 2a6h
2o5i D620-765 D1064-1437 3.63 3.03236 0 : 0 2o5i
3aoi N620-765 N1064-1437 3.36 2.96443 0 : 0 3aoi
2a69 N620-765 N1064-1437 3.7 2.95685 0 : 0 2a69