Query results for "1ynn":

Visualization of the domains and motifs in this PDB

Domain architecture of 1ynn, chain A:

legend:

: RNA_pol_L (20-222)

The following domain-domain interactions have been observed:

domain 1	in chain	domain 2	in chain	interaction
RNA_pol_L (Pfam)	A	RNA_pol_L (Pfam)	B
RNA_pol_L (Pfam)	A	RNA_pol_Rpb2_6 (Pfam)	C

Domain architecture of 1ynn, chain B:

legend:

: RNA_pol_L (22-224)

The following domain-domain interactions have been observed:

domain 1	in chain	domain 2	in chain	interaction
RNA_pol_L (Pfam)	A	RNA_pol_L (Pfam)	B
RNA_pol_L (Pfam)	B	RNA_pol_Rpb1_2 (Pfam)	D
RNA_pol_L (Pfam)	B	RNA_pol_Rpb1_3 (Pfam)	D
RNA_pol_L (Pfam)	B	RNA_pol_Rpb2_6 (Pfam)	C

Domain architecture of 1ynn, chain C:

legend:

: RNA_pol_Rpb2_1 (17-389)

: RNA_pol_Rpb2_3 (393-462)

: RNA_pol_Rpb2_45 (471-535)

: RNA_pol_Rpb2_6 (541-1026)

: RNA_pol_Rpb2_7 (1028-1104)

The following domain-domain interactions have been observed:

domain 1	in chain	domain 2	in chain	interaction
RNA_pol_L (Pfam)	A	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_L (Pfam)	B	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb1_1 (Pfam)	D	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb1_1 (Pfam)	D	RNA_pol_Rpb2_7 (Pfam)	C
RNA_pol_Rpb1_2 (Pfam)	D	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb1_2 (Pfam)	D	RNA_pol_Rpb2_7 (Pfam)	C
RNA_pol_Rpb1_3 (Pfam)	D	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb1_4 (Pfam)	D	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb1_5 (Pfam)	D	RNA_pol_Rpb2_3 (Pfam)	C
RNA_pol_Rpb1_5 (Pfam)	D	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb1_5 (Pfam)	D	RNA_pol_Rpb2_7 (Pfam)	C
RNA_pol_Rpb2_1 (Pfam)	C	RNA_pol_Rpb2_3 (Pfam)	C
RNA_pol_Rpb2_1 (Pfam)	C	RNA_pol_Rpb2_45 (Pfam)	C
RNA_pol_Rpb2_1 (Pfam)	C	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb2_3 (Pfam)	C	RNA_pol_Rpb2_45 (Pfam)	C
RNA_pol_Rpb2_3 (Pfam)	C	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb2_6 (Pfam)	C	RNA_pol_Rpb2_7 (Pfam)	C

Domain architecture of 1ynn, chain D:

(overlapping domains or motifs)

legend:

: RNA_pol_Rpb1_1 (1-182)

: RNA_pol_Rpb1_1 (415-616)

: RNA_pol_Rpb1_2 (618-763)

: RNA_pol_Rpb1_3 (766-952)

: RNA_pol_Rpb1_4 (981-1063)

: RNA_pol_Rpb1_5 (1062-1238)

The following domain-domain interactions have been observed:

domain 1	in chain	domain 2	in chain	interaction
RNA_pol_L (Pfam)	B	RNA_pol_Rpb1_2 (Pfam)	D
RNA_pol_L (Pfam)	B	RNA_pol_Rpb1_3 (Pfam)	D
RNA_pol_Rpb1_1 (Pfam)	D	RNA_pol_Rpb1_1 (Pfam)	D
RNA_pol_Rpb1_1 (Pfam)	D	RNA_pol_Rpb1_2 (Pfam)	D
RNA_pol_Rpb1_1 (Pfam)	D	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb1_1 (Pfam)	D	RNA_pol_Rpb2_7 (Pfam)	C
RNA_pol_Rpb1_2 (Pfam)	D	RNA_pol_Rpb1_3 (Pfam)	D
RNA_pol_Rpb1_2 (Pfam)	D	RNA_pol_Rpb1_5 (Pfam)	D
RNA_pol_Rpb1_2 (Pfam)	D	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb1_2 (Pfam)	D	RNA_pol_Rpb2_7 (Pfam)	C
RNA_pol_Rpb1_2 (Pfam)	D	RNA_pol_Rpb6 (Pfam)	K
RNA_pol_Rpb1_3 (Pfam)	D	RNA_pol_Rpb1_4 (Pfam)	D
RNA_pol_Rpb1_3 (Pfam)	D	RNA_pol_Rpb1_5 (Pfam)	D
RNA_pol_Rpb1_3 (Pfam)	D	RNA_pol_Rpb1_5 (Pfam)	J
RNA_pol_Rpb1_3 (Pfam)	D	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb1_3 (Pfam)	D	RNA_pol_Rpb6 (Pfam)	K
RNA_pol_Rpb1_4 (Pfam)	D	RNA_pol_Rpb1_5 (Pfam)	D
RNA_pol_Rpb1_4 (Pfam)	D	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb1_5 (Pfam)	D	RNA_pol_Rpb1_5 (Pfam)	J
RNA_pol_Rpb1_5 (Pfam)	D	RNA_pol_Rpb2_3 (Pfam)	C
RNA_pol_Rpb1_5 (Pfam)	D	RNA_pol_Rpb2_6 (Pfam)	C
RNA_pol_Rpb1_5 (Pfam)	D	RNA_pol_Rpb2_7 (Pfam)	C
RNA_pol_Rpb1_5 (Pfam)	D	RNA_pol_Rpb6 (Pfam)	K

Domain architecture of 1ynn, chain J:

legend:

: RNA_pol_Rpb1_5 (1-185)

The following domain-domain interactions have been observed:

domain 1	in chain	domain 2	in chain	interaction
RNA_pol_Rpb1_3 (Pfam)	D	RNA_pol_Rpb1_5 (Pfam)	J
RNA_pol_Rpb1_5 (Pfam)	D	RNA_pol_Rpb1_5 (Pfam)	J

Domain architecture of 1ynn, chain K:

legend:

: RNA_pol_Rpb6 (7-52)

The following domain-domain interactions have been observed:

domain 1	in chain	domain 2	in chain	interaction
RNA_pol_Rpb1_2 (Pfam)	D	RNA_pol_Rpb6 (Pfam)	K
RNA_pol_Rpb1_3 (Pfam)	D	RNA_pol_Rpb6 (Pfam)	K
RNA_pol_Rpb1_5 (Pfam)	D	RNA_pol_Rpb6 (Pfam)	K