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Query results for "RNA_pol_L_LIG_0":

RNA_pol_L_LIG_0 (PLoS_CB_2010)

The regular expression for RNA_pol_L_LIG_0 is R.VQF.A (derived by our method published in Stein & Aloy, PLoS CB 2010, last updated in Aug 2010). It binds to RNA_pol_L.

The motif RNA_pol_L_LIG_0 is found in the following PDB entries:

RNA_pol_L binds the following motifs and domains

HMM profile interface residues in RNA_pol_L binding partner(s)
residues 1-1 of RNA_pol_L are in the interface residues 3-3 of RNA_pol_L are in the interface residues 4-4 of RNA_pol_L are in the interface residues 5-5 of RNA_pol_L are in the interface residues 6-7 of RNA_pol_L are in the interface residues 8-8 of RNA_pol_L are in the interface residues 9-9 of RNA_pol_L are in the interface residues 10-10 of RNA_pol_L are in the interface residues 11-12 of RNA_pol_L are in the interface residues 14-14 of RNA_pol_L are in the interface residues 15-16 of RNA_pol_L are in the interface residues 18-19 of RNA_pol_L are in the interface residues 21-21 of RNA_pol_L are in the interface residues 22-22 of RNA_pol_L are in the interface residues 23-23 of RNA_pol_L are in the interface residues 46-50 of RNA_pol_L are in the interface residues 52-52 of RNA_pol_L are in the interface residues 54-54 of RNA_pol_L are in the interface residues 56-56 of RNA_pol_L are in the interface residues 65-65 of RNA_pol_L are in the interface residues 67-67 of RNA_pol_L are in the interface residues 70-71 of RNA_pol_L are in the interface residues 72-72 of RNA_pol_L are in the interface residues 73-73 of RNA_pol_L are in the interface residues 74-74 of RNA_pol_L are in the interface residues 75-75 of RNA_pol_L are in the interface residues 76-78 of RNA_pol_L are in the interface residues 79-79 of RNA_pol_L are in the interface residues 80-85 of RNA_pol_L are in the interface
RNA_pol_L DDI of RNA_pol_L and RNA_pol_L
residues 5-7 of RNA_pol_L are in the interface residues 9-9 of RNA_pol_L are in the interface residues 10-10 of RNA_pol_L are in the interface residues 11-11 of RNA_pol_L are in the interface residues 14-14 of RNA_pol_L are in the interface residues 15-15 of RNA_pol_L are in the interface residues 17-18 of RNA_pol_L are in the interface residues 19-20 of RNA_pol_L are in the interface residues 21-22 of RNA_pol_L are in the interface residues 23-23 of RNA_pol_L are in the interface residues 27-31 of RNA_pol_L are in the interface residues 32-34 of RNA_pol_L are in the interface residues 35-35 of RNA_pol_L are in the interface residues 36-43 of RNA_pol_L are in the interface residues 44-47 of RNA_pol_L are in the interface residues 49-53 of RNA_pol_L are in the interface residues 55-55 of RNA_pol_L are in the interface residues 56-56 of RNA_pol_L are in the interface residues 57-57 of RNA_pol_L are in the interface residues 59-59 of RNA_pol_L are in the interface
RNA_pol_Rpb1_3 DDI of RNA_pol_L and RNA_pol_Rpb1_3, RNA_pol_Rpb2_6 DDI of RNA_pol_L and RNA_pol_Rpb2_6
residues 6-7 of RNA_pol_L are in the interface residues 8-9 of RNA_pol_L are in the interface residues 10-11 of RNA_pol_L are in the interface residues 14-14 of RNA_pol_L are in the interface residues 17-18 of RNA_pol_L are in the interface residues 32-32 of RNA_pol_L are in the interface residues 41-41 of RNA_pol_L are in the interface residues 42-42 of RNA_pol_L are in the interface residues 44-44 of RNA_pol_L are in the interface residues 48-49 of RNA_pol_L are in the interface residues 50-50 of RNA_pol_L are in the interface residues 52-52 of RNA_pol_L are in the interface
RNA_pol_Rpb2_6 DDI of RNA_pol_L and RNA_pol_Rpb2_6
residues 10-10 of RNA_pol_L are in the interface residues 18-18 of RNA_pol_L are in the interface residues 35-36 of RNA_pol_L are in the interface residues 37-38 of RNA_pol_L are in the interface residues 39-39 of RNA_pol_L are in the interface residues 40-41 of RNA_pol_L are in the interface
RNA_pol_Rpb2_6 DDI of RNA_pol_L and RNA_pol_Rpb2_6, RNA_pol_Rpb1_4 DDI of RNA_pol_L and RNA_pol_Rpb1_4
residues 10-10 of RNA_pol_L are in the interface residues 39-41 of RNA_pol_L are in the interface residues 42-42 of RNA_pol_L are in the interface residues 43-43 of RNA_pol_L are in the interface residues 44-44 of RNA_pol_L are in the interface residues 45-46 of RNA_pol_L are in the interface residues 47-47 of RNA_pol_L are in the interface residues 48-48 of RNA_pol_L are in the interface residues 49-50 of RNA_pol_L are in the interface residues 51-51 of RNA_pol_L are in the interface
RNA_pol_Rpb1_2 DDI of RNA_pol_L and RNA_pol_Rpb1_2
residues 24-27 of RNA_pol_L are in the interface residues 31-31 of RNA_pol_L are in the interface residues 36-37 of RNA_pol_L are in the interface residues 56-56 of RNA_pol_L are in the interface residues 58-60 of RNA_pol_L are in the interface residues 61-62 of RNA_pol_L are in the interface
RNA_pol_Rpb8 DDI of RNA_pol_L and RNA_pol_Rpb8, RNA_pol_N DDI of RNA_pol_L and RNA_pol_N
residues 28-30 of RNA_pol_L are in the interface
RNA_pol_L_LIG_0 (R.VQF.A, from PLoS_CB_2010) DMI of RNA_pol_L and RNA_pol_L_LIG_0
residues 33-34 of RNA_pol_L are in the interface residues 35-35 of RNA_pol_L are in the interface residues 36-36 of RNA_pol_L are in the interface residues 37-37 of RNA_pol_L are in the interface residues 39-39 of RNA_pol_L are in the interface residues 41-41 of RNA_pol_L are in the interface
RNA_pol_Rpb1_3 DDI of RNA_pol_L and RNA_pol_Rpb1_3, RNA_pol_Rpb8 DDI of RNA_pol_L and RNA_pol_Rpb8, RNA_pol_Rpb2_6 DDI of RNA_pol_L and RNA_pol_Rpb2_6
residues 78-79 of RNA_pol_L are in the interface residues 82-82 of RNA_pol_L are in the interface
RNA_pol_Rpb2_6 DDI of RNA_pol_L and RNA_pol_Rpb2_6

Network of interacting domains and motifs

Network for RNA_pol_L_LIG_0, depth 2

thin line:interchain interaction onlybold line:intrachain interaction onlydashed line:both interchain and intrachain interaction
Color SchemeNetwork Depth
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by molecular_function (GO term)
by biological_process (GO term)
by cellular_component (GO term)