3did - Results

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Domain DNA_pol3_beta_2 (Pfam: PF02767.21

)

GO terms

F	GO:0003887	DNA-directed DNA polymerase activity

F	GO:0008408	3'-5' exonuclease activity

P	GO:0006260	DNA replication

C	GO:0009360	DNA polymerase III complex

Default colors
Domains are in orange, motifs in green.

Molecular function color scheme
Colored dots identify domains annotated with the corresponding GO term of Molecular function.

Cellular component color scheme
Colored dots identify domains annotated with the corresponding GO term of Cellular component.

Biological process color scheme
Colored dots identify domains annotated with the corresponding GO term of Biological process.

Default color scheme

Interacting domains (8 domains)

Bac_DnaA

DNA_pol3_beta

DNA_pol3_beta_2

DNA_pol3_beta_2

DNA_pol3_beta_3

DNA_pol3_beta_3

DNA_pol3_delta

DNA_pol3_delta2

DNA_pol3_delta2

IMS_C

MutL_C

Interacting motifs (2 motifs)

DNA_pol3_beta_2_LIG_0-0

DNA_pol3_beta_2_LIG_0-0

DNA_pol3_beta_2_LIG_1-1

DNA_pol3_beta_2_LIG_1-1

HMM profile interface residues in DNA_pol3_beta_2 (14 interfaces)

HMM prof. interface res.	Binding partner(s)
	DNA_pol3_beta DNA_pol3_beta_2 DNA_pol3_beta_3
	DNA_pol3_beta DNA_pol3_beta_2
	DNA_pol3_beta_2
	DNA_pol3_beta_3 MutL_C
	DNA_pol3_beta
	Bac_DnaA DNA_pol3_beta_2 DNA_pol3_beta_3 DNA_pol3_delta2
	DNA_pol3_beta DNA_pol3_beta_3 DNA_pol3_delta
	DNA_pol3_beta DNA_pol3_beta_2 DNA_pol3_beta_3 DNA_pol3_delta2
	DNA_pol3_beta_2_LIG_0-0 DNA_pol3_beta_2_LIG_1-1 DNA_pol3_delta IMS_C
	DNA_pol3_beta
	DNA_pol3_beta_2
	DNA_pol3_beta DNA_pol3_beta_2_LIG_1-1 DNA_pol3_delta2
	DNA_pol3_beta_2
	DNA_pol3_beta

PDB entries that contain the DNA_pol3_beta_2 domain (131 structures)

PDB	Chains	3did
1jqj	A, B
1jql	A
1mmi	A, B
1ok7	A, B
1unn	A, B
1vpk	A
2avt	A, B
2awa	A, B, C, D
2pol	A, B
2xur	A, B
3bep	A, B
3d1e	A, B
3d1f	A, B
3d1g	A, B
3f1v	A, B
3p16	A, B, C, D,...
3pwe	A, B
3q4j	A, B, C, D,...
3q4k	A, B
3q4l	A, B
3qsb	A, B
3rb9	A, B
3t0p	A, B
4k3k	A, B
4k3l	A, B
4k3m	A, B
4k3o	A, B
4k3p	A, B
4k3q	A, B
4k3r	A, B
4k3s	A, B
4k74	A, B
4mjp	A, B
4mjq	A, B
4mjr	A, B
4n94	A, B
4n95	A, B
4n96	A, B
4n97	A, B
4n98	A, B
4n99	A, B
4n9a	A, B
4ovf	A, B
4ovg	A, B

PDB	Chains	3did
4ovh	A, B
4pnu	A, B
4pnv	A, B
4pnw	A, B
4rki	A
4s3i	A, B
4tr6	A, B
4tr7	A, B
4tr8	A, B
4trt	A, B
4tsz	A, B, C, D,...
5agu	A, B
5agv	A, B
5ah2	A, B, C, D
5ah4	A, B
5fku	B, C
5fkv	B, C
5fkw	B, C
5frq	A, B, C, D
5fve	A
5fxt	A
5g48	A, B
5g4q	A, B
5m1s	B, C
5w7z	A, B
5wce	A, B
5wyp	A, B
5x06	A, B, C, D
6amq	A, B, C, D
6ams	A, B, C, D
6ap4	A, B, C, D,...
6d46	A
6d47	A
6deg	A, B
6dj8	A, B
6djk	A
6dlk	A, B
6dly	A, B
6dm6	A, B
6e8d	A, B, C, D
6e8e	A, B
6fvl	A, B, C, D
6fvm	A, B
6fvn	A, B, C, D

PDB	Chains	3did
6fvo	A, B, C, D
6izo	A, B
6jir	A, B
6man	A, B
6p81	A
6pth	A
6ptr	A, B
6ptv	A, B, C, D
7az5	A, B, C, D
7az6	A
7az7	A
7az8	A, B
7azc	A, B, C, D
7azd	A, B, C, D
7aze	A, B
7azf	A, B, C, D
7azg	A, B, C, D,...
7azk	A, B, C, D
7azl	A, B, C, D
7evp	A, B
7rzm	A
7ybd	A
8cix	A
8ciy	A
8ciz	A, B
8dj6	A, B, C, D
8djq	A, B, C, D
8dk9	A, B, C, D
8dkd	A
8dt6	A, B, C, D
8giy	H, I
8giz	H, I
8gj0	H, I
8gj2	H, I
8pat	A
8pay	A
8val	F, G
8vam	F, G
8van	F, G
8vap	F, G
8vaq	F, G
8var	F, G
8vas	F, G