3did - Results

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Domain DNA_pol_B (Pfam: PF00136.26

)

GO terms

F	GO:0000166	Nucleotide binding

F	GO:0003677	DNA binding

Default colors
Domains are in orange, motifs in green.

Molecular function color scheme
Colored dots identify domains annotated with the corresponding GO term of Molecular function.

Cellular component color scheme
Colored dots identify domains annotated with the corresponding GO term of Cellular component.

Biological process color scheme
Colored dots identify domains annotated with the corresponding GO term of Biological process.

Default color scheme

Interacting domains (13 domains)

BRCT_2

Chordopox_A20R

DNAP_B_exo_N

DNA_pol_B

DNA_pol_B_3

DNA_pol_B_exo1

DNA_primase_lrg

DNA_primase_lrg

DNApolII_insertion

DNApolII_insertion

DPOA2_OB

Herpes_UL42

PCNA_N

zf-C4pol

zf-DNA_Pol

Interacting motifs (1 motif)

DNA_pol_B_LIG_0-0

DNA_pol_B_LIG_0-0

HMM profile interface residues in DNA_pol_B (33 interfaces)

HMM prof. interface res.	Binding partner(s)
	DNA_pol_B_exo1
	DNAP_B_exo_N DNA_pol_B_exo1
	DNA_pol_B_exo1
	DNA_pol_B_exo1
	DNA_pol_B_3
	DNA_pol_B_3
	DNA_pol_B
	DNA_pol_B_exo1
	DNApolII_insertion DNA_pol_B_LIG_0-0
	DNA_pol_B DNA_pol_B_exo1
	DNA_pol_B DNA_pol_B_exo1
	Chordopox_A20R
	BRCT_2 zf-DNA_Pol
	DPOA2_OB
	zf-DNA_Pol
	DNA_primase_lrg
	zf-DNA_Pol
	DNA_pol_B_exo1
	DNA_primase_lrg
	DNA_pol_B_exo1
	DNA_pol_B DNA_pol_B_exo1
	DNA_pol_B
	DNA_pol_B
	DNA_pol_B DNA_pol_B_exo1
	DNA_pol_B_exo1
	DNA_pol_B
	zf-DNA_Pol
	zf-DNA_Pol
	DNA_pol_B
	Herpes_UL42
	zf-C4pol
	zf-DNA_Pol
	DNA_pol_B PCNA_N

PDB entries that contain the DNA_pol_B domain (282 structures)

PDB	Chains	3did
1clq	A
1d5a	A
1ig9	A
1ih7	A
1q8i	A
1q9x	A, B, C, D
1q9y	A
1qht	A
1qqc	A
1s5j	A
1tgo	A
1waf	A, B
1waj	A
1wn7	A
1wns	A
2atq	A
2dtu	A, B, C, D
2dy4	A, B, C, D
2gv9	A, B
2jgu	A
2oyq	A, B, C, D
2ozm	A
2ozs	A
2p5g	A, B, C, D
2p5o	A, B, C, D
2vwj	A
2vwk	A
2xhb	A
3a2f	A
3cfo	A
3cfp	A
3cfr	A
3cq8	A
3iay	A
3k57	A
3k58	A
3k59	A
3k5a	A
3k5l	A
3k5m	A
3k5n	A, B
3k5o	A, B
3kd1	E
3kd5	E
3l8b	A, B
3lds	A
3lzi	A
3lzj	A
3maq	A
3nae	A
3nci	A
3ndk	A
3ne6	A
3ngi	A
3nhg	A
3qei	A
3qep	A
3qer	A
3qes	A
3qet	A
3qev	A
3qew	A
3qex	A
3qnn	A
3qno	A
3rma	A, B, C, D
3rmb	A, B, C, D
3rmc	A, B, C, D
3rmd	A, B, C, D
3rwu	A
3s9h	A
3scx	A
3si6	A
3sjj	A
3snn	A
3spy	A
3spz	A
3sq0	A
3sq1	A
3sq2	A
3sq4	A
3sun	A
3suo	A
3sup	A
3suq	A
3tab	A, B, C, D
3tae	A, B, C, D
3taf	A, B, C, D
3tag	A, B, C, D
3uiq	A
4ahc	A, B
4ail	C
4b08	A
4dtj	A

PDB	Chains	3did
4dtm	A
4dtn	A
4dto	A
4dtp	A
4dtr	A
4dts	A
4dtu	A
4dtx	A
4du1	A
4du3	A
4du4	A
4e3s	A
4fj5	A
4fj7	A
4fj8	A
4fj9	A
4fjg	A
4fjh	A
4fji	A
4fjj	A
4fjk	A
4fjl	A
4fjm	A
4fjn	A
4fjx	A
4fk0	A
4fk2	A
4fk4	A
4flt	A
4flu	A
4flv	A
4flw	A
4flx	A
4fly	A
4flz	A
4fm0	A
4fm1	A
4fm2	A
4fvm	A
4fxd	A, B
4fyd	A, B
4i9l	A
4i9q	A, B
4j2a	A
4j2b	A
4j2d	A
4j2e	A
4k8x	A
4k8z	A
4khn	A, B
4khq	A
4khs	A
4khu	A
4khw	A
4khy	A
4ki4	A
4ki6	A
4m3r	A
4m3t	A
4m3u	A
4m3w	A
4m3x	A
4m3y	A
4m3z	A
4m41	A
4m42	A
4m45	A
4q5v	A, E
4qcl	A
5exr	C, G
5gnq	A, B
5h12	A
5iud	A, D, G, J
5mdn	A, B
5n2e	A
5n2g	A
5n2h	A
5omf	A
5omq	A
5omv	A
5vu5	A
5vu6	A
5vu7	A
5vu8	A
5vu9	A
6as7	A
6is7	A, B
6isf	A, B
6isg	A
6ish	A
6isi	A
6p1h	A
6q4t	A
6s1m	A

PDB	Chains	3did
6s1n	A
6s1o	A
6tny	A
6tnz	A
6v8p	A
6v93	A
6wya	A
6wyb	A
7b06	A
7b07	A
7b08	A
7b0f	A
7b0g	A
7b0h	E, F
7f4y	A, B
7kc0	A
7luf	A, B
7lxd	A
7m5p	A
7m5q	A
7m5r	A
7m5s	A
7n2m	A
7om3	A
7omb	A
7omg	A
7opl	A
7rsr	A
7rss	A
7rsu	A
7s0t	A
7tqw	A
7u5c	C
7uy7	E
8d0b	F
8d0k	F
8d96	C
8d9d	C
8exx	A
8foc	1
8fod	1
8foe	1
8foh	1
8foj	1
8fok	1
8g99	A
8g9f	A
8g9l	A
8g9n	A
8g9o	A
8hdz	A
8hg1	A
8hlz	A, D
8hm0	A
8hoy	A
8hpa	A
8j86	A
8j8f	A
8j8g	A
8k8s	A
8k8u	A
8oj6	A
8oj7	A
8oja	A
8ojb	A
8ojd	A
8q3r	E
8qj7	A
8s84	A
8s87	A
8t3x	A
8tlq	A
8tlt	A
8ucu	A
8ucv	A
8ucw	A
8v1q	A
8v1r	A
8v1s	A
8v1t	A
8v6g	A
8v6h	A
8v6i	A
8v6j	A
8vy3	C
8wpe	A
8wpf	A
8wpk	A
8wpp	A
9c8v	C
9emi	A
9enp	A
9enq	A
9gp8	A