3did - Results

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Domain Epimerase (Pfam: PF01370.26

)

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Domains are in orange, motifs in green.

Molecular function color scheme
Colored dots identify domains annotated with the corresponding GO term of Molecular function.

Cellular component color scheme
Colored dots identify domains annotated with the corresponding GO term of Cellular component.

Biological process color scheme
Colored dots identify domains annotated with the corresponding GO term of Biological process.

Default color scheme

Interacting domains (10 domains)

Aldose_epim

DUF1731

Epimerase

Formyl_trans_C

GDP_Man_Dehyd

NDUFA12

Oxidored_q3

Oxidored_q4

Oxidored_q6

RmlD_sub_bind

Interacting motifs (4 motifs)

Epimerase_LIG_0-0

Epimerase_LIG_0-0

Epimerase_LIG_6-0

Epimerase_LIG_6-0

Epimerase_LIG_7-0

Epimerase_LIG_7-0

Epimerase_LIG_7-1

Epimerase_LIG_7-1

HMM profile interface residues in Epimerase (32 interfaces)

HMM prof. interface res.	Binding partner(s)
	Epimerase
	Epimerase
	Oxidored_q4
	Epimerase
	Epimerase_LIG_0-0
	Epimerase
	DUF1731 Epimerase
	Epimerase GDP_Man_Dehyd Oxidored_q6
	Epimerase
	DUF1731 Epimerase
	Epimerase
	Epimerase
	Epimerase_LIG_6-0 Epimerase_LIG_7-0 Epimerase_LIG_7-1 NDUFA12
	Epimerase RmlD_sub_bind
	DUF1731 Epimerase
	Aldose_epim Oxidored_q6
	Epimerase
	Epimerase
	Epimerase
	Epimerase
	DUF1731
	Epimerase Formyl_trans_C
	Epimerase GDP_Man_Dehyd
	GDP_Man_Dehyd
	Epimerase
	Epimerase
	Epimerase
	Epimerase
	Epimerase GDP_Man_Dehyd
	Oxidored_q3
	Epimerase
	Epimerase

PDB entries that contain the Epimerase domain (385 structures)

PDB	Chains	3did
1a9y	A
1a9z	A
1bsv	A
1bws	A
1e6u	A
1e7q	A
1e7r	A
1e7s	A
1eq2	A, B, C, D,...
1fxs	A
1gfs	A
1i24	A
1i2b	A
1i2c	A
1kvq	A
1kvr	A
1kvs	A
1kvt	A
1kvu	A
1lrj	A
1lrk	A
1lrl	A
1nah	A
1nai	A
1qrr	A
1sb8	A
1sb9	A
1u9j	A
1uda	A
1udb	A
1udc	A
1ujm	A, B
1xel	A
1y1p	A, B
1z45	A
1z73	A
1z74	A
1z75	A
1z7b	A
1z7e	A, B, C, D,...
1zze	A, B
2b69	A
2bll	A
2c20	A, B, C, D,...
2c29	D, F
2c54	A, B
2c59	A, B
2c5a	A, B
2c5e	A, B
2hrz	A
2iod	A, B, C, D
2nnl	D, F
2p4h	X
2p5u	A, B, C, D
2p5y	A
2pzj	A
2pzk	A, B
2pzl	A, B
2pzm	A, B
2q1s	A
2q1t	A
2q1u	A, B
2q1w	A, B, C
2rh8	A
2udp	A, B
2x4g	A
2x6t	A, B, C, D,...
2x86	A, B, C, D,...
2yy7	A, B
2zkl	A
3a1n	A, B
3a4v	A, B
3a9w	A, B
3ajr	A, B
3aw9	A, B, C
3ay3	A, B, C, D
3bxx	A, B, C, D,...
3c1t	A, B, C, D
3ehe	A, B
3gpi	A
3hfs	A, B
3icp	A
3ko8	A
3lu1	A, B, C, D
3m2p	A, B, C, D,...
3oh8	A
3rft	A, B, C
3rfv	A, B, C
3rfx	A, B, C
3ru7	A, B, C, D
3ru9	A, B, C, D
3rua	A, B, C, D
3ruc	A, B, C, D
3rud	A, B, C, D
3rue	A, b, S
3ruf	A, b, S
3ruh	A, B, C, D
3slg	A, B, C, D,...
3st7	A
3sxp	A, B, C, D,...
3vhr	A
3vps	A, B
3wj7	A, B, C
3wmw	A, B
3wmx	A, B, C, D
4b4o	A, B, C, D,...
4b8w	A, B
4b8z	A, B, C, D
4bkp	A, B, C, D
4bl5	A, B, C, D,...
4e5y	A, B, C, D
4ej0	A, B, C, D,...
4id9	A, B
4idg	A, B
4lis	A, B, C
4lk3	A, B, C, D,...
4lw8	A, B
4m55	B, C, E
4pvd	C, D
4qqr	B
4qtz	A
4quk	A
4r1s	A, B
4r1t	A
4r1u	A, B
4twr	A
4wkg	A, B, C, D,...
4wok	A
4yr9	A, B, C, D,...

PDB	Chains	3did
4yra	A, B, C, D,...
4yrb	A, B, C, D,...
4yrd	A, B
4zrm	A, B
4zrn	A, B
5b6k	A
5gmo	A
5gy7	A, B
5k4q	A, B, C, D,...
5k4t	A
5k4u	A, C
5k4v	A, C
5k4w	A, C
5k4y	A, B, C, D,...
5k50	A, C, E, G,...
5l9a	A, B
5lc1	A, B, C, D,...
5lnk	d
5tqm	A, B
5u4q	A, B
5xtb	J
5xtd	J
5y1d	A, B
5y1e	A
5y1f	A
5y1g	A
5yw4	A
5ywl	A
5ywn	A
5z2x	A, B
5z75	A, B, C, D
5z76	A, B, C, D
5zec	A, B
5zed	A, B
6aqy	A, B, C, D,...
6aqz	A, B, C, D,...
6d2v	A, B
6dnt	A
6gcs	E
6h0n	A, B
6h0p	A, B
6jyg	A, B, C, D,...
6kv9	A
6kvc	A
6kws	A
6kwt	A
6ltt	A, B
6mfh	A
6nbr	A, B, C, D
6nd7	A, B
6pih	G, H, I, J,...
6pik	E, F, G, H
6pmh	A
6pnl	A
6rfq	E
6rfr	E
6rfs	E
6vo6	A, B, C, D
6vo8	A, B
6wj9	A, B
6wja	A, B
6wjb	A, B
6x3b	A, B, C, D
6y79	E
6yj4	P
6zk9	d
6zkc	d
6zkd	d
6zke	d
6zkf	d
6zkg	d
6zkh	d
6zki	d
6zkj	d
6zkk	d
6zkl	d
6zkm	d
6zkn	d
6zko	d
6zkp	d
6zkq	d
6zkr	d
6zks	d
6zkt	d
6zku	d
6zkv	d
6zl6	A, B
6zla	A, B, C, D
6zld	A, B
6zlj	A, B
6zlk	A, B, C, D
6zll	A, B, C, D
7a23	T
7a24	T
7anc	A, B
7anh	A
7aqr	P
7ar7	P
7ar8	P
7arb	P
7arc	P
7ard	P
7c1e	A, B
7c3v	A
7cgv	A, B, C, D
7cxt	A, B
7dgz	R
7dh0	R
7epr	A, B, C, D
7eps	A, B, C, D
7k3p	A, B
7kn1	A, B
7ll6	A
7m13	A, B
7o6y	E
7o71	E
7ol1	A, B
7qsd	P
7qsk	P
7qsl	P
7qsm	P
7qsn	P
7qso	P
7r41	P
7r42	P
7r43	P
7r44	P
7r45	P

PDB	Chains	3did
7r46	P
7r47	P
7r48	P
7r4c	P
7r4d	P
7r4f	P
7r4g	P
7v2c	J
7v2d	J
7v2e	J
7v2f	J
7v2h	J
7v2k	J
7v2r	J
7v30	J
7v31	J
7v32	J
7v33	J
7v3m	J
7vb7	J
7vbn	J
7vbz	J
7vwj	J
7vxp	J
7vxu	J
7vy8	J
7vya	J
7vyf	J
7vyh	J
7vyn	J
7vz1	J
7vzv	J
7vzw	J
7w00	J
7w0h	J
7w0r	J
7w0y	J
7w1o	J
7w1p	J
7w1t	J
7w1u	J
7w1v	J
7w1z	J
7w20	J
7w2k	J
7w2l	J
7w2r	J
7w2u	J
7w2y	J
7w31	J
7w32	J
7w35	J
7w4c	J
7w4d	J
7w4e	J
7w4f	J
7w4g	J
7w4j	J
7w4k	J
7w4l	J
7w4m	J
7w4n	J
7w4q	J
7xpm	A
7xwu	A, B
7y0k	A
7ys8	A, B
7ys9	A, B
7ysa	A, B
7ysm	A, B
7yst	A, B
7ysy	A, B
7yt0	A, B
7zd6	d
7zdh	d
7zdj	d
7zdm	d
7zdp	d
7zeb	d
7zm7	E
7zmb	E
7zmg	E
8b9z	P
8ba0	P
8bee	P
8du0	A
8ewu	A, B
8fem	A
8fen	A
8fet	A, B
8feu	A, B
8fev	A, B
8few	A, B
8fio	A, B
8fip	A, B
8ftn	A
8gil	A, B
8gjb	A, B
8gjh	A, B, C, D,...
8h61	B
8jqj	A
8jqk	A, B
8q0a	P
8q0f	P
8q0j	P
8q0m	P
8q0o	P
8q0q	P
8q1p	P
8q1u	P
8q1y	P
8q25	P
8q45	P
8q46	P
8q47	P
8q48	P
8q49	P
8q4a	P
8rdg	A, B
8rdh	A, B
8rdi	A, B, C, D
8sg0	A, B
8skb	A, B, C, D
8v4g	A, B
8v4h	A, B
8vr2	A, B, C, D
8wxk	A, B, C, D
8zav	A, B