3did - Results

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Domain Ku_N (Pfam: PF03731.20

)

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Domains are in orange, motifs in green.

Molecular function color scheme
Colored dots identify domains annotated with the corresponding GO term of Molecular function.

Cellular component color scheme
Colored dots identify domains annotated with the corresponding GO term of Cellular component.

Biological process color scheme
Colored dots identify domains annotated with the corresponding GO term of Biological process.

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Interacting domains (9 domains)

BRCT

DNAPKcs_CC5

DNA_ligase_A_C

DNA_ligase_A_N

Ku_C

Ku_N

PAXX

SAP

Interacting motifs (6 motifs)

Ku_N_LIG_3-0

Ku_N_LIG_3-16

Ku_N_LIG_3-18

Ku_N_LIG_3-3

Ku_N_LIG_3-47

Ku_N_LIG_4-0

HMM profile interface residues in Ku_N (14 interfaces)

HMM prof. interface res.	Binding partner(s)
	Ku_C
	Ku Ku_C PAXX
	Ku
	Ku
	Ku
	Ku
	DNAPKcs_CC5
	DNA_ligase_A_C Ku_N
	Ku_N_LIG_3-0 Ku_N_LIG_3-16 Ku_N_LIG_3-18 Ku_N_LIG_3-47
	DNA_ligase_A_N Ku_N Ku_N_LIG_3-3
	BRCT
	Ku_N_LIG_4-0
	Ku_C SAP
	Ku_C

PDB entries that contain the Ku_N domain (42 structures)

PDB	Chains	3did
1jeq	A, B
1jey	A, B
5y3r	A, B
5y58	A, B, C, D,...
5y59	B
6erf	A, B, C, D,...
6erg	A, B, D, E
6erh	A, B, C, D
6tyt	A
6tyu	A
6tyv	A
6tyw	A
6tyx	A, B
6tyz	A

PDB	Chains	3did
6zha	B, C
6zhe	B, C, G, H
7axz	A, B
7k0y	B, C
7k1j	B, C
7k1k	B, C
7k1n	B, C
7lsy	A, B, J, K
7lt3	A, B, J, K
7nfc	B, C, G, H
7nfe	B, C
7sgl	B, C
7su3	B, C
7z6o	A, B

PDB	Chains	3did
7z87	B, C
7z88	B, C
7zt6	A, B
7zvt	A, B
7zwa	A, B
7zyg	A, B
8ag4	A, B
8ag5	A, B
8asc	A, B, E, F,...
8bh3	B, C, L, T
8bhv	a, b, h, j
8bhy	B, C, L, T
8eza	A, B, J, K
8ezb	A, B, J, K