3did - Results

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Domain PHD (Pfam: PF00628.34

)

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Domains are in orange, motifs in green.

Molecular function color scheme
Colored dots identify domains annotated with the corresponding GO term of Molecular function.

Cellular component color scheme
Colored dots identify domains annotated with the corresponding GO term of Cellular component.

Biological process color scheme
Colored dots identify domains annotated with the corresponding GO term of Biological process.

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Interacting domains (16 domains)

Interacting motifs (22 motifs)

HMM profile interface residues in PHD (15 interfaces)

HMM prof. interface res.	Binding partner(s)
	BAH PAH PHD TTD
	Bromodomain PHD
	Bromodomain MRG PHD PHD_LIG_0-1 PHD_LIG_1-1 PHF12_MRG_bd zf-HC5HC2H_2
	BAH PHD PHD_LIG_3-1
	PHD
	Histone PHD PHD_LIG_2-0 PHD_LIG_2-1 PHD_LIG_2-12 PHD_LIG_2-2 PHD_LIG_2-22 PHD_LIG_2-38 PHD_LIG_2-6 PHD_LIG_3-0 PHD_LIG_6-0 PHD_LIG_6-1 PHD_LIG_6-2 PHD_LIG_6-6
	JHD
	Hist_deacetyl PHD_LIG_6-0 PHD_LIG_6-24
	PHD PHD_LIG_3-1
	ARID Chromo
	PHD PHD_LIG_1-5 RRM_1 V-set
	Bromodomain JmjC PHD V-set
	BAH PHD
	PHD_LIG_0-0 PHD_LIG_0-46 PHD_LIG_0-7 PHD_LIG_1-0 PHD_LIG_1-3
	Bromodomain

PDB entries that contain the PHD domain (362 structures)

PDB	Chains	3did
1f62	A
1fp0	A
1mm2	A
1mm3	A
1we9	A
1wee	A
1wem	A
1wep	A
1wes	A
1weu	A
1wev	A
1xwh	A
2dx8	A, B
2e6r	A
2e6s	A
2f6j	A, B, C
2f6n	A, B
2fsa	A, B, C
2fui	A
2fuu	A
2g6q	A
2jmi	A
2jmj	A
2k16	A
2k17	A
2ke1	A
2kft	A
2kgg	A
2kgi	A
2ku7	A
2kwj	A
2kwk	A
2kwn	A
2kwo	A
2kyu	A
2l5u	A
2l75	A
2lgg	A
2lgk	A
2lgl	A
2ln0	A
2m3h	A
2m85	A
2ma5	A
2md7	B
2md8	C
2miq	A
2mny	A
2mnz	A
2mum	A
2puy	A, B
2qic	A
2ri7	A
2ro1	A
2rsd	A
2vp7	A
2vpb	A
2vpd	A, C
2vpe	A, C
2vpg	A, C
2xb1	A, C
2yql	A
2ysm	A
2yt5	A
2yyr	A, B
3ask	A, B
3asl	A
3c6w	A, C
3gl6	A
3kqi	A
3kv4	A
3kv5	A, D
3kv6	A, D
3lqh	A
3lqi	A, B, C
3lqj	A, B
3n9l	A
3n9m	A, C
3n9n	A
3n9o	A
3n9p	A
3n9q	A
3o33	A, B, C, D
3o34	A
3o35	A, B
3o36	A, B
3o37	A, B, C, D
3puq	A, C
3qzv	A
3shb	A
3sou	A, B
3sow	A, B
3sox	A, B
3t6r	A, B
3u5m	A, B, C, D,...
3u5n	A, B
3u5o	A, B, C, D,...
3u5p	A, B, C, D,...
3v43	A
3zpv	1, 3, 5, 7,...
3zvy	A, B
3zvz	B
4cos	A
4gy5	A, B
4l7x	A
4ljn	A
4lk9	A
4lka	A
4llb	A, B
4ptb	A, B
4q6f	A, B, C, D
4qf2	A, B, C, D
4qf3	A, B
4tvr	A
4up0	A
4up5	A
4yab	A, B
4yad	A, B
4yat	A, B
4yax	A, B
4ybm	A, B

PDB	Chains	3did
4ybs	A
4ybt	A
4yc9	A
4zql	A, B
5b73	A
5b75	A
5b76	A
5b77	A
5b78	A
5b79	A
5c11	A
5c13	A, C, E, G
5fb0	A, C
5fb1	A
5h1t	A, B, C, D
5h1u	A, B, C, D
5h1v	A, B
5hh7	A
5i3l	A, B
5mr8	A
5pwc	B
5pwd	B
5pwe	A, B
5pwf	A, B
5pwg	A, B
5pwh	A, B
5pwi	A, B
5pwj	A, B
5pwk	A, B
5pwl	A, B
5pwm	A, B
5pwn	A, B
5pwo	A, B
5pwp	A, B
5pwq	A, B
5pwr	A, B
5pws	A, B
5pwt	A, B
5pwu	A, B
5pwv	A, B
5pww	A, B
5pwx	A, B
5pwy	A, B
5pwz	A, B
5px0	A, B
5px1	A, B
5px2	A, B
5px3	A, B
5px4	A, B
5px5	A, B
5px6	A, B
5px7	A, B
5px8	A, B
5px9	A, B
5pxa	A, B
5pxb	A, B
5pxc	A, B
5pxd	A, B
5pxe	A, B
5pxf	A, B
5pxg	A, B
5pxh	A, B
5pxi	A, B
5pxj	A, B
5pxk	A, B
5pxl	A, B
5pxm	A, B
5pxn	A, B
5pxo	A, B
5pxp	A, B
5pxq	A, B
5pxr	A, B
5pxs	A, B
5pxt	A, B
5pxu	A, B
5pxv	A, B
5pxw	A, B
5pxx	A, B
5pxy	A, B
5pxz	A, B
5py0	A, B
5py1	A, B
5py2	A, B
5py3	A, B
5py4	A, B
5py5	A, B
5py6	A, B
5py7	A, B
5py8	A, B
5py9	A, B
5pya	A, B
5pyb	A, B
5pyc	A, B
5pyd	A, B
5pye	A, B
5pyf	A, B
5pyg	A, B
5pyh	A, B
5pyi	A, B
5pyj	A, B
5pyk	A, B
5pyl	A, B
5pym	A, B
5pyn	A, B
5pyo	A, B
5pyp	A, B
5pyq	A, B
5pyr	A, B
5pys	A, B
5pyt	A, B
5pyu	A, B
5pyv	A, B
5pyw	A, B
5pyx	A, B
5pyy	A, B
5pyz	A, B
5pz0	A, B
5pz1	A, B
5pz2	A, B
5pz3	A, B
5pz4	A, B

PDB	Chains	3did
5pz5	A, B
5pz6	A, B
5pz7	A, B
5pz8	A, B
5pz9	A, B
5pza	A, B
5pzb	A, B
5pzc	A, B
5pzd	A, B
5pze	A, B
5pzf	A, B
5pzg	A, B
5pzh	A, B
5pzi	A, B
5pzj	A, B
5szb	A
5szc	A
5t8r	A, B, C, D
5u2j	A, B
5vab	A
5vdc	A
5wle	A
5wlf	A
5wxg	A
5wxh	A, C
5xfn	A
5xfo	A
5xfp	A, B, E
5xfq	A, B
5xfr	A, B
5xmy	A, C
5y1z	C, D
5y20	A
5yc3	A
5yc4	A
5z8l	A
5z8n	A, B, C
5znp	A, B
5znr	A, B
6aze	A
6fap	A, B, C, D
6fhq	A, B
6fhu	A, B, C, D
6fi0	A, B, C, D
6fi1	A, B
6fkp	A, B, C, D
6g5n	A, B
6g5p	A, B
6g8r	B
6guu	A, B
6iet	A
6ieu	A
6iiw	A
6j2p	A, B, C, D
6lqe	A
6lqf	A
6lsb	A
6mlc	A, B, C, D
6o7g	B
6oie	A, B
6q3m	A, B, C, D
6ryr	W
6ryu	V, W
6vfo	A
6wxk	D, E
7cwh	B
7d87	A
7d8a	A
7duf	A, B
7ebj	A
7ebk	A
7klo	A
7klr	A
7m10	A
7xga	A
7yi0	D, F
7yi2	D
7yi3	D
7yi4	D
7yi5	D
7zdd	A
7zey	B
7zez	B
8bd8	A
8bd9	A
8bdy	A
8bpa	C
8bpb	C
8bpc	C
8c60	C
8f8y	A, B
8f8z	A, B
8hxx	N, P
8hxy	N
8hy0	N, P
8i02	F, G
8i3f	B
8ifg	P
8ihn	M, O
8iht	M, O
8jho	N, P
8kc7	E, G
8kd2	E
8kd4	E
8kd5	E
8kd6	E
8kd7	E, G
8tof	G
8u2y	B
8w9c	E, F
8w9d	E, F
8w9e	E, F
8w9f	E, F
8wms	A
8xv4	A, B
8xv6	A, C
8xv7	A, C, E, G
8xv8	A, C, E, G
9atn	A
9c0o	A

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