3did - Results

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Domain SecY (Pfam: PF00344.25

)

GO terms

P	GO:0015031	Protein transport

C	GO:0016020	Membrane

Default colors
Domains are in orange, motifs in green.

Molecular function color scheme
Colored dots identify domains annotated with the corresponding GO term of Molecular function.

Cellular component color scheme
Colored dots identify domains annotated with the corresponding GO term of Cellular component.

Biological process color scheme
Colored dots identify domains annotated with the corresponding GO term of Biological process.

Default color scheme

Interacting domains (20 domains)

60KD_IMP

Bac_rhodopsin

P-loop_SecA

Plug_translocon

Plug_translocon

Ribosomal_L23

Ribosomal_L29

Sec61_beta

Sec62

Sec63

Sec66

SecA_DEAD

SecA_SW

SecD-TM1

SecDF_P1_head

SecD_1st

SecE

SecG

TRAP_alpha

V-set

YidC_periplas

HMM profile interface residues in SecY (19 interfaces)

HMM prof. interface res.	Binding partner(s)
	Plug_translocon
	Sec61_beta SecG
	Plug_translocon
	SecE
	60KD_IMP SecG
	Bac_rhodopsin
	SecA_SW
	SecA_SW
	SecA_DEAD
	SecG
	Sec62
	YidC_periplas
	Sec66 SecD-TM1 SecD_1st
	SecE
	SecDF_P1_head TRAP_alpha
	TRAP_alpha
	Ribosomal_L29
	Ribosomal_L23 Ribosomal_L29 V-set
	P-loop_SecA Sec63

PDB entries that contain the SecY domain (70 structures)

PDB	Chains	3did
1rh5	A
1rhz	A
1vvk	X
1vwz	1
1vx1	1
2ww9	A
2wwa	A
2wwb	A
2yxq	A
2yxr	A
2zjs	Y
2zqp	Y
3bo0	A
3bo1	A
3din	C, F
3dkn	A
3dl8	G, H
3j01	A
3j45	y
3j46	y
3jc2	1
3kcr	A
3mp7	A
4cg5	A

PDB	Chains	3did
4cg6	A
4cg7	A
4w25	1
4w27	1
5a6u	A
5abb	A
5aww	Y
5ch4	Y
5eul	Y
5gae	g
5mg3	Y
6itc	Y
6n3q	A
6nd1	B
6r7l	Y
6z3t	A
7aft	A
7kah	A
7kai	A
7kaj	A
7kak	A
7kal	A
7kam	A

PDB	Chains	3did
7kan	A
7kao	A
7kap	A
7kaq	A
7kar	A
7kas	A
7kat	A
7kau	A
7kb5	A
7xha	Y
7xhb	Y
7zl3	A
8b6l	A
8bf9	C
8dnv	A
8dnw	A
8dnx	A
8dny	A
8dnz	A
8do0	A
8do1	A
8do2	A
8do3	A