3did - Results

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Domain TNF (Pfam: PF00229.23

)

GO terms

F	GO:0005164	Tumor necrosis factor receptor binding

P	GO:0006955	Immune response

C	GO:0016020	Membrane

Default colors
Domains are in orange, motifs in green.

Molecular function color scheme
Colored dots identify domains annotated with the corresponding GO term of Molecular function.

Cellular component color scheme
Colored dots identify domains annotated with the corresponding GO term of Cellular component.

Biological process color scheme
Colored dots identify domains annotated with the corresponding GO term of Biological process.

Default color scheme

Interacting domains (10 domains)

2L_N_poxvirus

BCMA-Tall_bind

BaffR-Tall_bind

BaffR-Tall_bind

Lectin_C

RANK_CRD_2

TACI-CRD2

TNF

TNFR_c6

V-set

fn3

Interacting motifs (1 motif)

TNF_LIG_2-0

HMM profile interface residues in TNF (21 interfaces)

HMM prof. interface res.	Binding partner(s)
	TNF
	TNF V-set
	TNF TNFR_c6 V-set
	2L_N_poxvirus TNF TNFR_c6 V-set
	TNF V-set
	Lectin_C RANK_CRD_2 TNF TNFR_c6 V-set
	TNF
	fn3 TNF TNFR_c6 V-set
	TNF
	TNF
	V-set
	TNF TNFR_c6
	2L_N_poxvirus TNF TNFR_c6
	TNF
	BCMA-Tall_bind TACI-CRD2
	BaffR-Tall_bind BCMA-Tall_bind TACI-CRD2 TNF_LIG_2-0
	TNFR_c6 V-set
	TNF
	TNF
	TNF_LIG_2-0
	TNF

PDB entries that contain the TNF domain (126 structures)

PDB	Chains	3did
1a8m	A, B, C
1aly	A
1d0g	A, B, D
1d2q	A, B
1d4v	B
1dg6	A
1du3	D, E, F, J,...
1i9r	A, B, C
1iqa	A, B, C
1jh5	A, B, C, D,...
1jtz	X, Y, Z
1kd7	A, B, C, K,...
1kxg	A, B, C, D,...
1oqd	A, B, C, D,...
1oqe	A, B, C, D,...
1osg	A, B, C, D,...
1otz	0, 1, 2, 3,...
1rj7	A, B, D, E,...
1rj8	A, B, D, E,...
1s55	A, B, C
1tnf	A, B, C
1tnr	A
1u5x	A
1u5y	A, B, D
1u5z	A
1xu1	A, B, D
1xu2	A, B, D
2az5	A, B, C, D
2e7a	A, B, C
2o0o	A, B, C
2qe3	A
2re9	A, B, C
2rjk	A
2rjl	A
2tnf	A, B, C
2tun	A, B, C, D,...
2wak	A
2x29	A
2zjc	A, B, C
2zpx	A, B, C
3alq	A, B, C, D,...
3it8	A, B, C, G,...

PDB	Chains	3did
3k48	A, B, D
3k51	A
3l9j	T
3lkj	A, B, C
3me2	A
3mi8	A
3nzy	A, C
3qbq	A, C
3qd6	A, B, C, D,...
3ugn	A, B, C
3urf	A
3v56	A, B, C, D,...
3wd5	A
4e4d	X
4en0	A, B, C
4g3y	C
4giq	A
4ht1	T
4j6g	A, B
4kg8	A, B, C
4kgg	A, B
4kgq	A, B
4msv	A
4mxv	A, B, D
4mxw	A, B, D, X,...
4n90	A, B, C
4rsu	A, B, C, G,...
4tsv	A
4twt	A, B, C, D
4zch	A, B
5bnq	A
5cir	A, B, D
5l19	A
5l36	A
5m2i	A, B, C, D,...
5m2j	A
5m2m	A, B, C, G,...
5mu8	A, a, B, b,...
5tsw	A, B, C, D,...
5uui	A
5wux	E, F, G
5y9j	A

PDB	Chains	3did
5yoy	A, B, C, J,...
6a3v	A, C, E, G,...
6brb	A
6bwv	A, B
6cpr	A, B, C
6cu0	A, B, C, D,...
6d3n	A
6erx	A, B, C, J,...
6fib	A, B, C
6fxn	A, B, C, J,...
6i50	A
6mge	A, B, C
6mgp	A, B, C
6mkb	A, B, C, D
6mkz	A, C
6ooy	A, B, C
6ooz	A, B, C
6op0	A, B, C
6rmj	A, B, C
6w9g	A, B, C
6x81	A, B, C, D,...
6x82	A, B, C, D,...
6x83	A, B, C, D,...
6x85	A, B, C, D,...
6x86	A, B, C, D,...
7dov	A, B, C
7e57	A
7jra	A, B, C
7kp7	A, B, C
7kp8	A, B, C
7kp9	A, B, C
7kpa	A, B, C
7kpb	A, B, C
7kx0	A, B, C
7msg	A, B, C
7sgm	A, B, C
7ta3	B, D
7ta6	A, B, C, D,...
7x9g	A, B
8kb6	A
8slr	D
8z8m	A, C, E, G,...