3did - Results

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Domain YBD (Pfam: PF17725.6

)

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Domains are in orange, motifs in green.

Molecular function color scheme
Colored dots identify domains annotated with the corresponding GO term of Molecular function.

Cellular component color scheme
Colored dots identify domains annotated with the corresponding GO term of Cellular component.

Biological process color scheme
Colored dots identify domains annotated with the corresponding GO term of Biological process.

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Interacting domains (4 domains)

TEADIR3

VGLL4

Vg_Tdu

YBD

Interacting motifs (4 motifs)

YBD_LIG_1-0

YBD_LIG_1-21

YBD_LIG_1-34

YBD_LIG_1-4

HMM profile interface residues in YBD (10 interfaces)

HMM prof. interface res.	Binding partner(s)
	YBD
	YBD
	TEADIR3 YBD_LIG_1-0 YBD_LIG_1-4
	YBD_LIG_1-21 YBD_LIG_1-34
	YBD
	YBD
	VGLL4 YBD
	YBD
	Vg_Tdu YBD
	Vg_Tdu

PDB entries that contain the YBD domain (73 structures)

PDB	Chains	3did
3jua	A, C, E, G
3kys	A, C
3l15	A, B
4eaz	A, B
4ln0	A, B
4re1	A, B
5dq8	A, B
5dqe	A, B
5emv	A, B
5emw	A, B, C, D
5gn0	A, B, C, D
5hgu	A, B
5oaq	A
5xjd	A, B
5z2q	A, B
6cdy	A, B
6e5g	A, B
6ge3	A
6ge4	A
6ge5	A
6ge6	A
6gec	A
6gee	A
6geg	A
6gei	A

PDB	Chains	3did
6gek	A, B
6hik	A
6hil	A, B, C, D
6im5	A, B
6l9f	A, B
6q2x	A
6q36	A, B
6s60	A, B
6s64	A, B
6s66	A, B
6s69	A, B
6s6j	A, B
6sba	A
6sen	A, B
6seo	A
6uyb	A, B
6uyc	A, B
6vah	A, B
6y20	A, B
7cmm	A, B, C, D
7cnl	A, B, C, D
7li5	A, B
7oyj	A, B
7t2j	A, B

PDB	Chains	3did
7t2k	A, B
7t2l	A, B
7t2m	A, B
7typ	A, B
7tyq	A, B
7tyu	A, B
7zjp	A, B
7zjq	A, B, C, D
8a0u	A, B, C, D
8a0v	A, B, C, D
8a8q	A, B
8a8r	A, B
8c17	A
8caa	A, B
8cuh	A, B
8e1o	A, B
8p0m	A, B, C, D
8p29	A, B
8poj	A, B
8pom	A, B
8pon	A, B
8pux	A, B
8puy	A, B
8q68	A, B